Dear all:
I am calculating the binding energy of membrane protein and its ligand
via MMPBSA.py.
However, in the AMBER manual file, the parameter mctrdz means is
explained "Membrane center in Å in the z direction. Default is 0 -
membrane centered at the center of the protein."
My question is : "the center of the protein" means "the center of the
whole protein" or "the center of the trans membrane domain of protein"?
thank you.
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Received on Tue Sep 12 2023 - 20:30:02 PDT
