[AMBER] Reg: Modified LYS residues - Can I use Gaff if so how to link with hybrid AMBERff14SB and GAFF

From: Lara rajam <lara.4884.gmail.com>
Date: Tue, 8 Feb 2022 15:01:03 -0500

Dear AMBER,
Sorry for posting it again - I have not got any insight!
I am interested in generating a simulation for PLP linked LYS for my
protein.
I have gone through the forum and got the same question asked in 2018
( http://archive.ambermd.org/201803/0040.html). But I am not able to find
the solution for it. Can anyone let me know what needs to be done?.

Can I follow the non standard residue tutorial? If so , how do I need to
take the combined residue atoms for Gaff ?

Any information will be appreciated.
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Received on Tue Feb 08 2022 - 12:30:02 PST
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