[AMBER] Structure alteration and shortening of loops using xleap

From: Sruthi Sudhakar <sruthisudhakarraji.gmail.com>
Date: Mon, 19 Jul 2021 17:11:41 +0530

Dear all,

I have an RNA sequence as below:

In this, the bold region forms a loop. I want to remove the underlined base
pairs( adjacent to the loop) and connect the loop to the rest of the
system. In this way my system would be shorter. Is it possible to do such
removal and fixing using xleap? Kindly guide regarding the same.
After removal my system should look like this

Sruthi Sudhakar
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Received on Mon Jul 19 2021 - 05:00:02 PDT
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