[AMBER] saving pdb and rst at specific frames in trajectory

From: Sadaf Rani <sadafrani6.gmail.com>
Date: Wed, 17 Mar 2021 18:23:17 +0500

 Dear Amber users
Please correct me on how should I save PDB and rst file at a specific
frame. I have a trajectory of 2000 frames and I want to save PDB files at
e.g first, 500, 1500, and 2000 frames.
I used the following command to save at first and 2000 frames however when
I load pdb in vmd it is loaded as a complete trajectory. Could anyone
please correct me?
I used the following command in cpptraj:-

parm complex.prmtop
trajin Prod.nc
trajout out_frame.pdb pdb multi nobox onlyframes 1,2000

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Received on Wed Mar 17 2021 - 06:30:03 PDT
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