HI
you would want to look at ZAFF tutorials to get this right
https://ambermd.org/tutorials/advanced/tutorial20/ZAFF.htm
Best Regards
Elvis
On Sat, 17 Oct 2020 at 10:26, Jenny 148 <jenny.rs140.gmail.com> wrote:
> Hi,
> I have a pdb structure, where in I have added a few zinc ions. These zinc
> ions are supposed to be coordinated with a few of the Amino acids. Since I
> added the ions by simple superimposition, the coordinate bond is not well
> defined and the ions are far from the expected position. Is there some way
> to change the position of these ions in xleap and create the coordinate
> bond required in this system? Thank you in advance.
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Received on Fri Oct 16 2020 - 22:30:02 PDT
