I have a peptide (ESFLE) as substrate for a protein. I have converted this
file to a mol2 format file using chimera. Now when i am running
antechamber; it is showing an error message regarding open valency. The C5
atom belongs to the side chain of glutamic acid.
Please provide suggestions on how I can overcome this error.
Is there any other way to add charges to peptide?
Thanks & Regards,
Pooja Kesari
Post Doctoral Fellow
Department Of Biosciences and Bioengineering
Indian Institute of Technology Bombay
INDIA
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Received on Tue Aug 25 2020 - 02:00:02 PDT
