Hi everybody
I'm having some issues while installing Amber20. I'm new to Amber and I'm
following the instructions in the Amber Manual.
After running ./run_cmake, I run: sudo make install. It goes well until 36%
where I receive the following error message:
[ 0%] Built target ucpp
[ 1%] Built target dispatch
[ 2%] Built target netcdf3
[ 2%] Built target netcdf
[ 3%] Built target ncgen
[ 3%] Built target ncgen3
[ 3%] Built target nccopy
[ 3%] Built target ncdump
[ 4%] Built target netcdff
[ 4%] Built target xblas_build
[ 7%] Built target blas
[ 15%] Built target lapack
[ 16%] Built target arpack
[ 16%] Built target PerlMol
[ 16%] Built target boost_build
[ 17%] Built target amber_common
[ 19%] Built target rism
[ 20%] Built target libpbsa
[ 20%] Built target sff_rism_interface
[ 20%] Built target dsarpack_obj
[ 20%] Built target sff_lex
[ 21%] Built target sff
[ 22%] Built target gbnsr6
[ 22%] Built target cifparse
[ 23%] Built target addles
[ 23%] Built target sander_rism_interface
[ 25%] Built target sqm_common
[ 26%] Built target libsqm
[ 26%] Built target sff_fortran
[ 32%] Built target sander_base_obj
[ 34%] Built target sebomd
[ 35%] Built target emil
[ 36%] Linking Fortran executable sander
/usr/bin/ld: CMakeFiles/sander_base_obj.dir/Plumed.c.o:(.data.rel+0x0):
referencia a `plumedmain_create' sin definir
/usr/bin/ld: CMakeFiles/sander_base_obj.dir/Plumed.c.o:(.data.rel+0x8):
referencia a `plumedmain_cmd' sin definir
/usr/bin/ld: CMakeFiles/sander_base_obj.dir/Plumed.c.o:(.data.rel+0x10):
referencia a `plumedmain_finalize' sin definir
collect2: error: ld returned 1 exit status
make[2]: *** [AmberTools/src/sander/CMakeFiles/sander.dir/build.make:493:
AmberTools/src/sander/sander] Error 1
make[1]: *** [CMakeFiles/Makefile2:3521:
AmberTools/src/sander/CMakeFiles/sander.dir/all] Error 2
make: *** [Makefile:152: all] Error 2
I'm sorry that it is in spanish. The error message states that there is
apparently an undefined reference.
I think I'm having some issues with Plumed. I've uninstalled and
reinstalled but I keep getting the same error messages.
Could you please help me with this issue?
Thank you very much
Best regards
--
Dr. Alejandro J. Cagnoni
Instituto de Biología y Medicina Experimental
Consejo Nacional de Investigaciones Científicas y Técnicas
Buenos Aires (1425), Argentina
(011)47832869. int. 204
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jul 24 2020 - 14:00:03 PDT
