Dear prof. Case,
not luck with 'make distclean'. I didn't plan that, but it looks like I
need AmberTools20...
Thanks for your help!
Regards,
Karolina
pon., 20 lip 2020 o 19:05 David A Case <david.case.rutgers.edu> napisał(a):
> On Mon, Jul 20, 2020, Dan Roe wrote:
>
> >Seems like /usr/local/src/amber18/lib/libcpptraj.so is out of date for
> >some reason. I'm not really an expert on how cmake tries to figure out
> >dependencies so I'm not exactly sure what's going on, but maybe try to
> >remove /usr/local/src/amber18/lib/libcpptraj.so so it gets regenerated
> >with references to the proper libnetcdf.so? Someone better versed in
> >cmake may want to chime in here.
>
> I don't think this has anything to do with cmake. This
> is AmberTools19, and the user is clearly running configure, not cmake.
>
> >> I'm having problem with upgrading AmberTools 18 to AmberTools19 on
> Ubuntu
> >> 18.04.
> >> I run
> >> ./update_amber --upgrade to upgrade from AmberTools18 to AmberTools19. I
> >> downloaded all available patches and then run
> >> ./configure gnu
> >> and
> >> make install
>
> Try running "make distclean" before the "make install" step. It could
> be that something is left over from the AmberTools18 build that is
> getting in the way of compiling AmberTools19.
>
> Even better, in my view: make the jump to AmberTools20. You can still
> use pmemd* from Amber18, but everything else will benefit from getting
> the bugfixes and improvements inherent in the latest version.
>
> ....good luck...dac
>
>
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Received on Mon Jul 20 2020 - 13:00:03 PDT
