Hello!
Perhaps this example could help to get you started
https://amberhub.chpc.utah.edu/making-movies/
Best,
Rodrigo
On Wed, Jul 1, 2020, 6:25 AM Chetna Tyagi <cheta231.gmail.com> wrote:
> Dear all,
>
> Thank you for all your suggestions...😊
>
> -Chetna
>
> On Wed 1 Jul, 2020, 1:56 PM Raman Preet Singh, <
> ramanpreetsingh.hotmail.com>
> wrote:
>
> > Chetna, when you load your trajectory in VMD, move the graphical display
> > to your desired pose and select Toggle Fixed. You may just click F
> written
> > in front of the trajectory and your protein is fixed. In representations,
> > go to trajectory tab where you can play around with values to smooth the
> > video, the default is set to zero. Increasing to 6 or 8 smoothes the
> videos
> > in my systems and might vary in yours - just play around with it.
> >
> > Go through the VMD tutorial, it provides dumb easy instructions to
> follow.
> >
> > Best,
> > Raman
> >
> > Get Outlook for Android<https://aka.ms/ghei36>
> >
> > ________________________________
> > From: Carlos Simmerling <carlos.simmerling.gmail.com>
> > Sent: Wednesday, July 1, 2020 4:10:47 PM
> > To: AMBER Mailing List <amber.ambermd.org>
> > Subject: Re: [AMBER] how to create nice animated videos to show
> simulations
> >
> > You will probably get more help on the VMD email list, or looking at
> their
> > tutorials. A good start is to learn the rmsd trajectory tool that will
> keep
> > your peptide centered. You can also do that using cpptraj in Amber, but
> for
> > videos it might just be easier to do it all in VMD.
> >
> > On Wed, Jul 1, 2020, 6:31 AM Chetna Tyagi <cheta231.gmail.com> wrote:
> >
> > > Dear all,
> > >
> > > Can anyone direct me how to create nice animation videos for my
> > > simulations?
> > >
> > > Using VMD I can not control many aspects of how the final video will
> look
> > > like.
> > > The peptide moves in every direction (in the solvent box) and it is not
> > > good to be used in a presentation.
> > >
> > > Is it possible to keep the peptide static, fixed to one point while the
> > > structural changes can be observed smoothly.
> > >
> > > Like in this example, https://www.youtube.com/watch?v=B4sS1iIp-Qk the
> > view
> > > of the peptides remains static and fixed.
> > >
> > > Any help or ideas are appreciated and much needed.
> > >
> > > --
> > > Best wishes
> > > Chetna
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Received on Wed Jul 01 2020 - 07:00:03 PDT
