Hi! Sorry to be so long responding.
Which monosaccharide, and where do you want the N-acetyl group?
Depending on your answer, there might be more or less work involved.
In any case, I recommend asking this question on the GLYCAM mailing
list: https://listserv.uga.edu/cgi-bin/wa?A0=GLYCAM-L
On Thu, Jun 25, 2020 at 9:34 AM <rosaester.forgione.unina.it> wrote:
>
> Good morning,
>
> I need to perform an MD simulation of an oligosaccharide with some
> modification not included in glycam. I tried to build a library for
> the sugar bearing an N-acetylation instead of the standard O-
> acetylation. However I am not able to get the parameters for the
> oligosaccharide even when i load the library corresponding to the
> modified sugar. Is there another way to accomplish this? Any
> suggestion is welcome. Thanks a lot
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 01 2020 - 05:00:03 PDT
