Re: [AMBER] bulding a monosaccharide with N-acetylation

From: Lachele Foley <>
Date: Wed, 1 Jul 2020 07:55:06 -0400

Hi! Sorry to be so long responding.

Which monosaccharide, and where do you want the N-acetyl group?
Depending on your answer, there might be more or less work involved.

In any case, I recommend asking this question on the GLYCAM mailing

On Thu, Jun 25, 2020 at 9:34 AM <> wrote:
> Good morning,
> I need to perform an MD simulation of an oligosaccharide with some
> modification not included in glycam. I tried to build a library for
> the sugar bearing an N-acetylation instead of the standard O-
> acetylation. However I am not able to get the parameters for the
> oligosaccharide even when i load the library corresponding to the
> modified sugar. Is there another way to accomplish this? Any
> suggestion is welcome. Thanks a lot
> _______________________________________________
> AMBER mailing list

:-) Lachele
Lachele Foley
Athens, GA USA
AMBER mailing list
Received on Wed Jul 01 2020 - 05:00:03 PDT
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