Re: [AMBER] Mol2 to generatee prepc and frcmod fo using Antechamer

From: David A Case <david.case.rutgers.edu>
Date: Tue, 19 May 2020 21:25:15 -0400

On Tue, May 19, 2020, Lod King wrote:

>*But my modified compound did have the error:*
>
>$ antechamber -i st0.mol2 -fi mol2 -o st0.prepc -fo prepc -nc -0 -c bcc -s
>2 -at gaff2

The st0.mol2 file is missing the hydrogens in the five-membered ring.

>
>*So I added "-dr no" in my antechamber, and it worked fine.*

My guess is that "worked fine" is in the eye of the beholder :-)

...dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 19 2020 - 18:30:03 PDT
Custom Search