You might get more answers to this question on the GLYCAM mailing
list. Folks who pay attention there have done similar things. I can
give you some ideas, but I haven't worked on this system. Someone
else there might have better knowledge.
GLYCAM-L mailing list: https://listserv.uga.edu/cgi-bin/wa?A0=GLYCAM-L
On Sun, May 17, 2020 at 10:06 AM Harald Lanig <harald.lanig.fau.de> wrote:
>
>
> Dear AMBER community,
> I am interested in adding a single molecule of galactose to 5-Hydroxylysine.
> Unfortunately, I am not able to find a template for this modified residue.
> Moreover, the AMBER18 reference manual tells me in the section "Setting up
> protein pdb files for glycosylation in LEaP":
> "At present, it is possible to link glycans to serine, threonine,
> hydroxyproline and asparagine".
> Can someone please recommend me a procedure for creating a
> 5-Galacto-hydroxylysine? Even better, can anyone point me to templates to be
> used with Leap?
> Any hint is highly appreciated!
> Stay healthy,
> Harald
> --
> --------------------------------------------------------
> PD Dr. Harald Lanig Universitaet Erlangen/Nuernberg
> Zentralinstitut fuer Scientific Computing (ZISC)
> Forschungsdatenmanagement SFB 814 und SFB 1411
> Martensstrasse 5a 91058 Erlangen
> +49 9131-85 20781 [1]harald.lanig.fau.de
> --------------------------------------------------------
>
> References
>
> 1. mailto:harald.lanig.fau.de
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--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Tue May 19 2020 - 13:30:02 PDT
