Hi,
Personally, I would recommend against using Intel MPI 19 at this
point. I have had a lot of trouble getting it to function correctly,
use the correct device (e.g. IB instead of ethernet), etc. I have
gotten much better results with mvapich (my personal favorite),
OpenMPI (although I typically see worse performance with OpenMPI), and
older versions of Intel MPI.
-Dan
On Mon, Oct 28, 2019 at 10:58 AM Vlad Cojocaru
<vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>
> Dear all,
>
> I am trying to compile Amber 18 with AmberTools 19 on a supercomputer. I
> tried using the default environment that provides intel mpi 2019 and gcc
> 9.2.0 ... However, when trying to compile the MPI executables I get the
> error attached here ...
>
> Previously I was able to compile on the same machine with impi 2018 and
> gcc 7.4 .. Now gcc 7 is not available anymore
>
> I am not able to fully understand this "unexpected end of file issue"
> but I thought it looks more like a coding issue than an environment
> issue. So I thought asking here is more appropriate than at the
> computing center ....
>
> Has anyone seen anything similar and if yes, any idea how to fix it ?
>
> Thank you for any advise
>
> Best wishes
> Vlad
>
>
>
>
> --
> Vlad Cojocaru, PD (Habil.), Ph.D.
> -----------------------------------------------
> Project Group Leader
> Department of Cell and Developmental Biology
> Max Planck Institute for Molecular Biomedicine
> Röntgenstrasse 20, 48149 Münster, Germany
> -----------------------------------------------
> Tel: +49-251-70365-324; Fax: +49-251-70365-399
> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> http://www.mpi-muenster.mpg.de/43241/cojocaru
>
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Received on Wed Oct 30 2019 - 07:30:02 PDT
