Hi,
Try the 'time <step>' keyword where <step> is the time between frames
in ps (or whatever units you want). For example, if I have a
trajectory recorded every 10 ps:
surf res1sasa :1-168 out surf_x.dat time 10.0
See the manual for more details.
-Dan
On Tue, Oct 29, 2019 at 1:47 AM Airy Sanjeev <airy.sanjeev01.gmail.com> wrote:
>
> Hello Amber Users,
>
> I tried to calculate SASA for the last 90 ns trajectory but in the plot
> (xmgrace) it generated the number of frames (x-axis). My input file is as
> follows:
>
>
>
>
>
>
>
>
> *trajin prod1.mdcrd 5440 50000center :1-168 mass originimage origin
> centerstrip :WATstrip :Na+strip :Cl-secstruct :1-168 out dssp_x.gnu
> dssp_x.agrsurf res1sasa :1-168 out surf_x.dat*
>
> Kindly help me to sort out the problem, I basically need total time in the
> x-axis and not the number of frames.
>
>
> --
> with best regards,
> Airy Sanjeev, PhD
> Post Doctoral Fellow
> Indian Institute of Technology Guwahati, Guwahati
> Assam-781039, India
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Received on Wed Oct 30 2019 - 07:00:02 PDT
