If I understood correctly the question, the directory in which I
untared Amber and Ambertools is the same with the folder amber18, in
which everythong installed.
So,
Installation in /home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
and tars in /home/lamphs/Desktop/iGem/dry_lab/packages/amber18
Quoting Hai Nguyen <nhai.qn.gmail.com>:
> On Sat, Sep 14, 2019 at 4:36 AM <charalamm.cheng.auth.gr> wrote:
>
>> Dear Hai Nguyen,
>>
>> Thank you for replying. As the manual suggests I did the following:
>>
>> $ tar xvfj AmberTools19.tar.bz2
>> $ tar xvfj Amber18.tar.bz2
>>
>> $ export
>> AMBERHOME=/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
>>
>> I didn't install the packages as I already had them(bc csh flex
>> gfortran g++ xorg-dev zlib1g-dev libbz2-dev patch)
>>
>> $ cd $AMBERHOME
>> $ ./configure gnu
>> $ source /home/myname/amber18/amber.sh
>> $ make install
>>
>> And I pressed Yes to miniconda and everythong else during the installation.
>>
>>
> Don't mix two amber location. You have
> /home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
> and /home/myname/amber18/
>
> Which one is your path after you untar the AmberTools19.tar.bz2 folder?
>
> for example, below is how I would do
> $ tar xvfj AmberTools19.tar.bz2
> $ tar xvfj Amber18.tar.bz2
> $ cd amber18
> $ export AMBERHOME=`pwd`
> $ ./configure gnu
> $ source $AMBERHOME/amber.sh
> $ make install
>
> cheers
> Hai
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Received on Sun Sep 15 2019 - 01:30:02 PDT
