On Sat, Sep 14, 2019 at 4:36 AM <charalamm.cheng.auth.gr> wrote:
> Dear Hai Nguyen,
>
> Thank you for replying. As the manual suggests I did the following:
>
> $ tar xvfj AmberTools19.tar.bz2
> $ tar xvfj Amber18.tar.bz2
>
> $ export
> AMBERHOME=/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
>
> I didn't install the packages as I already had them(bc csh flex
> gfortran g++ xorg-dev zlib1g-dev libbz2-dev patch)
>
> $ cd $AMBERHOME
> $ ./configure gnu
> $ source /home/myname/amber18/amber.sh
> $ make install
>
> And I pressed Yes to miniconda and everythong else during the installation.
>
>
Don't mix two amber location. You have
/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
and /home/myname/amber18/
Which one is your path after you untar the AmberTools19.tar.bz2 folder?
for example, below is how I would do
$ tar xvfj AmberTools19.tar.bz2
$ tar xvfj Amber18.tar.bz2
$ cd amber18
$ export AMBERHOME=`pwd`
$ ./configure gnu
$ source $AMBERHOME/amber.sh
$ make install
cheers
Hai
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Received on Sat Sep 14 2019 - 12:00:02 PDT
