Dear Hai Nguyen,
Thank you for replying. As the manual suggests I did the following:
$ tar xvfj AmberTools19.tar.bz2
$ tar xvfj Amber18.tar.bz2
$ export AMBERHOME=/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
I didn't install the packages as I already had them(bc csh flex
gfortran g++ xorg-dev zlib1g-dev libbz2-dev patch)
$ cd $AMBERHOME
$ ./configure gnu
$ source /home/myname/amber18/amber.sh
$ make install
And I pressed Yes to miniconda and everythong else during the installation.
My best regards,
Charalampos
Quoting Hai Nguyen <nhai.qn.gmail.com>:
> On Fri, Sep 13, 2019 at 5:59 AM <charalamm.cheng.auth.gr> wrote:
>
>> Dear all,
>>
>> After installing Amber18 and AmberTools19 Amber commands did't run.
>>
>>
> what do mean about "did't run"? How did you install them?
>
>
>> To make them work we did run the following:
>>
>> $ source $AMBERHOME/miniconda/bin/activate
>> $ pip install parmed
>> $ pip install git+https://github.com/amber-md/pdb4amber
>>
>> Is this normal?
>>
>>
> No it's not. They are already included in AmberTools19.
>
> Hai
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Received on Sat Sep 14 2019 - 02:00:02 PDT
