Best Regards
On Sun, 15 Sep 2019 at 13:57, <charalamm.cheng.auth.gr> wrote:
> If I understood correctly the question, the directory in which I
> untared Amber and Ambertools is the same with the folder amber18, in
> which everythong installed.
>
> So,
> Installation in /
> home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
>
Therefore, this is should be your $AMBERHOME
add the following lines in you .bashrc file and try
export AMBERHOME=/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
export PATH=$AMBERHOME/bin:$PATH
export LD_LIBRARY_PATH=$AMBERHOME/lib:$LD_LIBRARY_PATH
> and tars in /home/lamphs/Desktop/iGem/dry_lab/packages/amber18
>
> Quoting Hai Nguyen <nhai.qn.gmail.com>:
>
> > On Sat, Sep 14, 2019 at 4:36 AM <charalamm.cheng.auth.gr> wrote:
> >
> >> Dear Hai Nguyen,
> >>
> >> Thank you for replying. As the manual suggests I did the following:
> >>
> >> $ tar xvfj AmberTools19.tar.bz2
> >> $ tar xvfj Amber18.tar.bz2
> >>
> >> $ export
> >> AMBERHOME=/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
> >>
> >> I didn't install the packages as I already had them(bc csh flex
> >> gfortran g++ xorg-dev zlib1g-dev libbz2-dev patch)
> >>
> >> $ cd $AMBERHOME
> >> $ ./configure gnu
> >> $ source /home/myname/amber18/amber.sh
> >> $ make install
> >>
> >> And I pressed Yes to miniconda and everythong else during the
> installation.
> >>
> >>
> > Don't mix two amber location. You have
> > /home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18
> > and /home/myname/amber18/
> >
> > Which one is your path after you untar the AmberTools19.tar.bz2 folder?
> >
> > for example, below is how I would do
> > $ tar xvfj AmberTools19.tar.bz2
> > $ tar xvfj Amber18.tar.bz2
> > $ cd amber18
> > $ export AMBERHOME=`pwd`
> > $ ./configure gnu
> > $ source $AMBERHOME/amber.sh
> > $ make install
> >
> > cheers
> > Hai
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Sep 15 2019 - 05:30:02 PDT
