Dear Elvis,
Thank you again for your reply!
$ which sander
/home/lamphs/miniconda2/bin/sander
and
which $AMBERHOME/bin/sander
/home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18/bin/sander
Do you think that amber18 and ambertools 19 do work normally?
Best regards,
Charalampos
Quoting Elvis Martis <elvis_bcp.elvismartis.in>:
> Alright. What is the output when you type
> which sander??
> Best Regards
>
>
>
> On Fri, 13 Sep 2019 at 18:37, <charalamm.cheng.auth.gr> wrote:
>
>> Elvis, yes I did. Thanks for replying
>>
>> Quoting Elvis Martis <elvis_bcp.elvismartis.in>:
>>
>> > He
>> > Did you try
>> > source $AMBERHOME/amber.sh or amber.csh ??
>> > Best Regards
>> >
>> >
>> >
>> > On Fri, 13 Sep 2019 at 15:31, <charalamm.cheng.auth.gr> wrote:
>> >
>> >> Dear all,
>> >>
>> >> After installing Amber18 and AmberTools19 Amber commands did't run.
>> >>
>> >> To make them work we did run the following:
>> >>
>> >> $ source $AMBERHOME/miniconda/bin/activate
>> >> $ pip install parmed
>> >> $ pip install git+https://github.com/amber-md/pdb4amber
>> >>
>> >> Is this normal?
>> >>
>> >> Thank you very much!
>> >> Charalampos
>> >>
>> >>
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>> >>
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>>
>>
>>
>>
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Received on Fri Sep 13 2019 - 10:00:03 PDT
