On Friday, September 13, 2019, <charalamm.cheng.auth.gr> wrote:
> Dear Elvis,
> Thank you again for your reply!
>
> $ which sander
> /home/lamphs/miniconda2/bin/sander
> >> this is a very strange location location.
and
>
> which $AMBERHOME/bin/sander
> /home/lamphs/Desktop/iGem/dry_lab/packages/amber18/amber18/bin/sander
This also looks little strange to me.
> Do you think that amber18 and ambertools 19 do work normally?
>
> Can you tell us the exact steps you took to untar and compile Amber?
> Best regards,
> Charalampos
>
> Quoting Elvis Martis <elvis_bcp.elvismartis.in>:
>
> > Alright. What is the output when you type
> > which sander??
> > Best Regards
> >
> >
> >
> > On Fri, 13 Sep 2019 at 18:37, <charalamm.cheng.auth.gr> wrote:
> >
> >> Elvis, yes I did. Thanks for replying
> >>
> >> Quoting Elvis Martis <elvis_bcp.elvismartis.in>:
> >>
> >> > He
> >> > Did you try
> >> > source $AMBERHOME/amber.sh or amber.csh ??
> >> > Best Regards
> >> >
> >> >
> >> >
> >> > On Fri, 13 Sep 2019 at 15:31, <charalamm.cheng.auth.gr> wrote:
> >> >
> >> >> Dear all,
> >> >>
> >> >> After installing Amber18 and AmberTools19 Amber commands did't run.
> >> >>
> >> >> To make them work we did run the following:
> >> >>
> >> >> $ source $AMBERHOME/miniconda/bin/activate
> >> >> $ pip install parmed
> >> >> $ pip install git+https://github.com/amber-md/pdb4amber
> >> >>
> >> >> Is this normal?
> >> >>
> >> >> Thank you very much!
> >> >> Charalampos
> >> >>
> >> >>
> >> >> _______________________________________________
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> >> >>
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> >> > http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >>
> >>
> >>
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> >>
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>
>
>
>
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--
Best Regards
Elvis Martis
Mumbai.
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Received on Fri Sep 13 2019 - 10:30:02 PDT
