You must select the type of file as netcdf (not amber restrt file) while
loading your restrt file in VMD.
I am not sure if VMD on windows has started to support netcdf format but in
Linux you should have no problem.
On Wednesday, September 4, 2019, Sadaf Rani <sadafrani6.gmail.com> wrote:
> Hi Elvis
> it is an amber restart file (eq_p.rst as mentioned in below command)
> I have selected amber restart file from file format options
> The vmd window gives following message
> I rst7plugin) Title: CDF
>
> I am using following command
> sander -O -i eq_p.in -p complex.prmtop -c Heat.rst -r eq_p.rst -x
> eq_p.crd
> -o eq_p.out
> I also tried with .crd file but nothing is shown in vmd
>
> Looking forward to hear from you
>
> thank you
>
> Sadaf
>
> On Wed, Sep 4, 2019 at 4:21 PM Elvis Martis <elvis_bcp.elvismartis.in>
> wrote:
>
> > Are you trying to load netcdf format restart file in VMD?
> >
> > On Wednesday, September 4, 2019, Sadaf Rani <sadafrani6.gmail.com>
> wrote:
> >
> > > Dear Amber users
> > > I have run constant pressure constant temperature equilibration. I want
> > to
> > > look for the box size for the but when I load .prmtop file in vmd and
> > load
> > > .rst file on it, vmd stops working and vmd window shows that this file
> > > could not be read. Could anyone please suggest me which files to load
> in
> > > vmd and analyze box.
> > >
> > > Thanks in advance.
> > >
> > > Sadaf
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> > --
> > Best Regards
> > Elvis Martis
> > Mumbai.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Best Regards
Elvis Martis
Mumbai.
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Received on Wed Sep 04 2019 - 09:30:03 PDT
