Yes i found the safe problem, try to convert to pdb, you can use the
following one liner
cpptraj -p topology-file.prmtop -y coordinate-file.rst7 -x output-file.pdb
And then use chimera vmd etc to visualize
HTH
Fabian
On Wed, Sep 4, 2019, 18:05 Sadaf Rani <sadafrani6.gmail.com> wrote:
> Dear Amber users
> I have run constant pressure constant temperature equilibration. I want to
> look for the box size for the but when I load .prmtop file in vmd and load
> .rst file on it, vmd stops working and vmd window shows that this file
> could not be read. Could anyone please suggest me which files to load in
> vmd and analyze box.
>
> Thanks in advance.
>
> Sadaf
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Received on Wed Sep 04 2019 - 09:30:02 PDT
