Hi Elvis
it is an amber restart file (eq_p.rst as mentioned in below command)
I have selected amber restart file from file format options
The vmd window gives following message
I rst7plugin) Title: CDF
I am using following command
sander -O -i eq_p.in -p complex.prmtop -c Heat.rst -r eq_p.rst -x eq_p.crd
-o eq_p.out
I also tried with .crd file but nothing is shown in vmd
Looking forward to hear from you
thank you
Sadaf
On Wed, Sep 4, 2019 at 4:21 PM Elvis Martis <elvis_bcp.elvismartis.in>
wrote:
> Are you trying to load netcdf format restart file in VMD?
>
> On Wednesday, September 4, 2019, Sadaf Rani <sadafrani6.gmail.com> wrote:
>
> > Dear Amber users
> > I have run constant pressure constant temperature equilibration. I want
> to
> > look for the box size for the but when I load .prmtop file in vmd and
> load
> > .rst file on it, vmd stops working and vmd window shows that this file
> > could not be read. Could anyone please suggest me which files to load in
> > vmd and analyze box.
> >
> > Thanks in advance.
> >
> > Sadaf
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
> --
> Best Regards
> Elvis Martis
> Mumbai.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Wed Sep 04 2019 - 09:30:02 PDT
