Re: [AMBER] sander engine problem

From: Pratul Agarwal <>
Date: Mon, 12 Aug 2019 14:28:24 +0000

Can you check if your $AMBERHOME is correctly set to your AMBER installation?
This can be checked by command: "echo $AMBERHOME"
Make sure this points to your AMBER installation.

Pratul K. Agarwal, Ph.D.
(Editorial Board Member: PLoS ONE, Microbial Cell Factories)

On 8/12/2019 10:24 AM, Rui Chen wrote:


I am running a minimization using the following command. However, I got an
error. Could you please help me solve this problem? Thank you.

$AMBERHOME/bin/sander -O -i -o 01_Min.out -p parm7 -c rst7
-r 01_Min.ncrst \
-inf 01_Min.mdinfo

 -bash: /bin/sander: No such file or directory

Best regards,
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Received on Mon Aug 12 2019 - 07:30:03 PDT
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