[AMBER] Error iin running mmpbsa

From: shivangi agarwal <shiviagarwalpharma.gmail.com>
Date: Sat, 10 Aug 2019 22:06:39 +0530

Hello all

I am running MMPBSA but getting error as below:

* mm_pbsa.pl <http://mm_pbsa.pl> MMPBSA.in > mmpbsa.log*
Use of uninitialized value $inp in concatenation (.) or string at
/opt/apps/amber/amber12/src/mm_pbsa/mm_pbsa_createinput.pm line 600.
Use of uninitialized value in numeric eq (==) at
/opt/apps/amber/amber12/src/mm_pbsa/mm_pbsa_createinput.pm line 627.
Use of uninitialized value $inp in concatenation (.) or string at
/opt/apps/amber/amber12/src/mm_pbsa/mm_pbsa_createinput.pm line 600.
Use of uninitialized value in numeric eq (==) at
/opt/apps/amber/amber12/src/mm_pbsa/mm_pbsa_createinput.pm line 627.
Use of uninitialized value $inp in concatenation (.) or string at
/opt/apps/amber/amber12/src/mm_pbsa/mm_pbsa_createinput.pm line 600.
Use of uninitialized value in numeric eq (==) at
/opt/apps/amber/amber12/src/mm_pbsa/mm_pbsa_createinput.pm line 627.
* /opt/apps/amber/amber12/bin/sander -O -i pbsa_com.in
<http://pbsa_com.in> -o pbsa_com.1.out -c /home/shivangi/test2/b_com.crd.1
-p complex.prmtop not successful*
Can someone help to get out of it.

Thanks and regards
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Received on Sat Aug 10 2019 - 10:00:02 PDT
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