Re: [AMBER] continuous DNA

From: David A Case <>
Date: Thu, 9 May 2019 13:44:04 -0400

On Thu, May 09, 2019, Qinghua Liao wrote:
>I am running simulations of protein-DNA systems, as the DNA sequences
>are quite long,
>I am wondering how I can set up a continuous DNA along one axial

I'm not sure exactly what you mean. Amber doesn't allow covalent bonds
between molecules in different unit cells. So: you can't create an
"inifinite" helix making use of periodic boundary conditions.

But I'm not at all sure if this is what you meant by your question.


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Received on Thu May 09 2019 - 11:00:03 PDT
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