On Thu, May 09, 2019, Qinghua Liao wrote:
>
>I am running simulations of protein-DNA systems, as the DNA sequences
>are quite long,
>I am wondering how I can set up a continuous DNA along one axial
>directions.
I'm not sure exactly what you mean. Amber doesn't allow covalent bonds
between molecules in different unit cells. So: you can't create an
"inifinite" helix making use of periodic boundary conditions.
But I'm not at all sure if this is what you meant by your question.
...dac
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Received on Thu May 09 2019 - 11:00:03 PDT
