[AMBER] FEW not producing *.lib file for ligand

From: ali akbar <akbar2181.gmail.com>
Date: Thu, 2 May 2019 14:20:12 +0430

Hi,
Using workflow tool FEW to generate coordinates files for ligand-receptor
simulation, all the files are generated except the *.lib file. Would you
please help me in this regard. The command I used is as follows:
$AMBERHOME/AmberTools/src/FEW/FEW.pl MMPBSA
/media/Backup/alizadeh/s1p1/FEW/tutorial/tutorial/command_files/commonMDsetup/leap_am1

The massage I qot is as follows:
[ali.localhost ~]$ $AMBERHOME/AmberTools/src/FEW/FEW.pl MMPBSA
/media/Backup/ali
zadeh/s1p1/FEW1/tutorial/cfiles/leap_am1 &
[1] 6688
[ali.localhost ~]$
                #####################################################
                # #
                # FEW #
                # Free Energy Workflow #
                # #
                #####################################################


Checking input parameters and files.

WARNING:
The residue name in the ligand file
/media/Backup/alizadeh/s1p1/FEW1/tutorial/structs/L51g.mol2
you provided is longer than three characters and will be shortened
to the first three characters.

Calculating AM1-BCC charges for ligand L51g.

Generating structures for L51g.

WARNING:
The existing receptor file
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_rec.pdb
will be re-named to
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_rec.pdb.setup1.
If you want to use this file for simulation setup later,
please re-change the name into
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_rec.pdb.

WARNING:
The existing ligand file
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_lig.pdb
will be re-named to
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_lig.pdb.setup1.
If you want to use this file for simulation setup later,
please re-change the name into
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_lig.pdb.

WARNING:
The existing complex file
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_com.pdb
will be re-named to
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_com.pdb.setup1.
If you want to use this file for simulation setup later,
please re-change the name into
/media/Backup/alizadeh/s1p1/FEW1/tutorial/leap/L51g/L51g_com.pdb.


Running LEaP for lib-file generation for L51g.
Terminated without warnings.
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Received on Thu May 02 2019 - 03:00:01 PDT
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