Re: [AMBER] command from ambertools tutorial does not working

From: Sasthi Charan Mandal <sasthi.phys.gmail.com>
Date: Tue, 26 Feb 2019 23:18:51 +0530

It shows only syntax error.

On Tue, Feb 26, 2019 at 11:12 PM Daniel Roe <daniel.r.roe.gmail.com> wrote:

> What is the exact error message you receive?
>
> -Dan
>
> On Tue, Feb 26, 2019 at 12:29 PM Sasthi Charan Mandal
> <sasthi.phys.gmail.com> wrote:
> >
> > Dear sir/madam,
> > I am following the simulation of small fragment of DNA from
> > ambertools tutorial. But I stuck on energy minimization step. the
> > command : $AMBERHOME/bin/sander
> > -O -i polyAT_vac_init_min.in -o polyAT_vac_init_min.out -c
> polyAT_vac.rst7
> > -p polyAT_vac.prmtop -r polyAT_vac_init_min.ncrst is not working and it
> > shows syntax error. Do I have to modify the command? could you please
> help
> > me out of the problem?
> > with regards
> > Sasthi
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Received on Tue Feb 26 2019 - 10:00:02 PST
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