On Tue, Feb 26, 2019, Sasthi Charan Mandal wrote:
>It shows only syntax error.
>
>On Tue, Feb 26, 2019 at 11:12 PM Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
>> What is the exact error message you receive?
>>
>> > I am following the simulation of small fragment of DNA from
>> > ambertools tutorial. But I stuck on energy minimization step. the
>> > command : $AMBERHOME/bin/sander
>> > -O -i polyAT_vac_init_min.in -o polyAT_vac_init_min.out -c
>> polyAT_vac.rst7
>> > -p polyAT_vac.prmtop -r polyAT_vac_init_min.ncrst is not working and it
>> > shows syntax error. Do I have to modify the command? could you please
>> help
We really need *exact* details, with a very strict interpretation of
the word "exact".
Did you type by hand the above command at the shell prompt? Was
everything on a single line? Can you copy and paste both what you typed
and the entire response that came to the terminal? Is there anything in
the " polyAT_vac_init_min.out" file?
....dac
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Received on Wed Feb 27 2019 - 11:30:02 PST
