Re: [AMBER] Query regarding Amber installation

From: Rakesh Srivastava <>
Date: Mon, 1 Oct 2018 21:51:31 +0530

Thanks for your reply Hai and Dac. Surely I will try your suggestions.
Thanks again.

Rakesh Srivastava
Research Fellow
School of Computational & Integrative Sciences
Jawaharlal Nehru University, New Delhi-110067

On Mon, Oct 1, 2018 at 9:13 PM David A Case <> wrote:

> On Mon, Oct 01, 2018, Rakesh Srivastava wrote:
> >
> > Previously I had Amber installed on Ubuntu16 and a few days back I
> upgraded
> > it to Ubuntu18.04. After this I was facing some problem in running the
> > calculations and hence I tried to reinstall Amber but I am getting
> > following error at "make install" step:
> Sigh. The default compiler for Ubuntu18.04 is gcc7, which was released
> after Amber16 was developed. But the error reported below should have
> been fixed in AmberTools17. So, you have two main options:
> 1. Download AmberTools18. This is known to work with gcc7 and
> Ubunut18.04, and has lots of fixes and upgrades to other things as well.
> 2. Use $AMBERHOME/update_amber --upgrade to upgrade your AmberTools16 to
> AmberTools17 (this happens in place.) I'm not sure if this will solve
> all problems related to Ubuntu18.04 (which is still much newer than
> AmberTools17, as you can tell from the "17" vs "18" in the distribution
> names,) but it should move in the right direction.
> ...hope this helps....dac
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Received on Mon Oct 01 2018 - 09:30:02 PDT
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