Amber16 has some installation issue on Ubuntu18.04 but I got Amber18
installed successfully.
Thanks Dac.
Rakesh Srivastava
Research Fellow
School of Computational & Integrative Sciences
Jawaharlal Nehru University, New Delhi-110067
India
On Mon, Oct 1, 2018 at 9:51 PM Rakesh Srivastava <allahabad.21.gmail.com>
wrote:
> Thanks for your reply Hai and Dac. Surely I will try your suggestions.
> Thanks again.
>
> Rakesh Srivastava
> Research Fellow
> School of Computational & Integrative Sciences
> Jawaharlal Nehru University, New Delhi-110067
> India
>
>
>
> On Mon, Oct 1, 2018 at 9:13 PM David A Case <david.case.rutgers.edu>
> wrote:
>
>> On Mon, Oct 01, 2018, Rakesh Srivastava wrote:
>> >
>> > Previously I had Amber installed on Ubuntu16 and a few days back I
>> upgraded
>> > it to Ubuntu18.04. After this I was facing some problem in running the
>> > calculations and hence I tried to reinstall Amber but I am getting
>> > following error at "make install" step:
>>
>> Sigh. The default compiler for Ubuntu18.04 is gcc7, which was released
>> after Amber16 was developed. But the error reported below should have
>> been fixed in AmberTools17. So, you have two main options:
>>
>> 1. Download AmberTools18. This is known to work with gcc7 and
>> Ubunut18.04, and has lots of fixes and upgrades to other things as well.
>>
>> 2. Use $AMBERHOME/update_amber --upgrade to upgrade your AmberTools16 to
>> AmberTools17 (this happens in place.) I'm not sure if this will solve
>> all problems related to Ubuntu18.04 (which is still much newer than
>> AmberTools17, as you can tell from the "17" vs "18" in the distribution
>> names,) but it should move in the right direction.
>>
>> ...hope this helps....dac
>>
>>
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>>
>
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Received on Thu Oct 04 2018 - 22:30:03 PDT
