Hi Karolina,
Thank you so much for the suggestion. I will try to run VMD on Linux.
Qing
At 2018-06-24 20:14:51, "Karolina Mitusi¨˝ska (Markowska)" <markowska.kar.gmail.com> wrote:
>Hi Qing,
>
>are you using VMD on Windows? If so, it won't work. VMD for Windows does
>not recognize NetCDF trajectories.
>
>If you are using VMD on Linux you can, for example, type in the terminal
>something like:
>vmd -parm7 your_topology.prmtop -netcdf your_trajectory.nc
>and it should work.
>
>Best regards,
>Karolina
>
>
>2018-06-24 8:36 GMT+02:00 Qing Lv <lvqingjiejie.163.com>:
>
>> Dear Colleagues,
>>
>>
>> I am trying to load Amber trajectory file (.nc file, NetCDF format) to
>> VMD, but failed. VMD cannot recognize .nc file and the "Determine file
>> type" droplist does not have the option "NetCDF"; if I choose Amber format,
>> it says "Problem reading CRD file". I tried VMD 1.9.2 and the latest
>> version 1.9.3.
>> I found a note at VMD official website regarding the NetCDF plugin, but
>> there are no download links:
>> http://www.ks.uiuc.edu/Research/vmd/plugins/molfile/netcdfplugin.html
>> Is this plugin embeded in VMD? And how to find it?
>>
>>
>> Thanks,
>> Qing
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
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Received on Sun Jun 24 2018 - 06:30:03 PDT
