[AMBER] Change x-axis from frame # to time in gnu plot created with secstruct command using cpptraj

From: Krantzman, Kristin D <KrantzmanK.cofc.edu>
Date: Mon, 11 Jun 2018 19:07:31 +0000

Greetings AMBER Mailing List,

I have a question about cpptraj.

I am trying to replace the frame # with time in the x-axis of a gpu formatted output file created by cpptraj.

I tried following the secstruct command with a datafile command, i.e. datafile sec.gnu time 0.02. However, this new file had both the x-axis changed to time and the labels for the contour to numbers instead of the label for the secondary structure.

Is there a straightforward way to do this? I want to change the frame # 1-5000 in the plot to frame # 1-20.

Thank you.

Best, Kristin



Dr. Kristin D. Krantzman

Professor

Department of Chemistry and Biochemistry College of Charleston

66 George St.

Charleston, SC 29424



843-953-5587





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sec_Polyala_19_asn_g20.jpeg
(image/jpeg attachment: sec_Polyala_19_asn_g20.jpeg)

Received on Mon Jun 11 2018 - 12:30:01 PDT
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