Thank you for pointing me to that thread! I will see if I can get the
drivers updated.
On Fri, Jun 8, 2018 at 11:07 AM, Stephan Schott <schottve.hhu.de> wrote:
> Hi Wesley,
> As the error states, the driver seems to be inadequate to the CUDA version
> you have in your environment. Please check this to see minimal driver
> versions (sorry, I didn't find the official list, but this should do):
> https://stackoverflow.com/questions/30820513/what-is-
> version-of-cuda-for-nvidia-304-125
> Best regards,
>
> 2018-06-08 19:36 GMT+02:00 Wesley Michael Botello-Smith <wmsmith.uci.edu>:
>
> > Hello everyone,
> > I am attempting to get amber18 up and running on our cluster using
> cuda91
> > on our GTX980 cards.
> > I can get everything to compile perfectly fine using
> >
> > > ./configure -cuda gnu
> > and
> > > make -j 8 install
> >
> > Unfortunately, when I cd to the test folder and run
> >
> > > make test.cuda.serial
> >
> > every test results in the error:
> >
> > cudaGetDeviceCount failed CUDA driver version is insufficient for CUDA
> > runtime version
> >
> > CUDA91 was installed using rpm modules obtained from our cluster's
> vendor.
> >
> > I have made several attempts here and I can verify that the driver is
> > correct for CUDA91:
> >
> > > nvidia-smi
> > Fri Jun 8 10:27:02 2018
> > +------------------------------------------------------+
> >
> > | NVIDIA-SMI 352.93 Driver Version: 352.93 |
> >
> > |-------------------------------+----------------------+----
> > ------------------+
> > | GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr.
> > ECC |
> > | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util
> Compute
> > M. |
> > |===============================+======================+====
> > ==================|
> > | 0 GeForce GTX 980 On | 0000:02:00.0 Off |
> > N/A |
> > | 26% 35C P8 10W / 180W | 15MiB / 4095MiB | 0%
> > Default |
> > +-------------------------------+----------------------+----
> > ------------------+
> > | 1 GeForce GTX 980 On | 0000:03:00.0 Off |
> > N/A |
> > | 26% 37C P8 10W / 180W | 15MiB / 4095MiB | 0%
> > Default |
> > +-------------------------------+----------------------+----
> > ------------------+
> > | 2 GeForce GTX 980 On | 0000:83:00.0 Off |
> > N/A |
> > | 26% 38C P8 10W / 180W | 15MiB / 4095MiB | 0%
> > Default |
> > +-------------------------------+----------------------+----
> > ------------------+
> > | 3 GeForce GTX 980 On | 0000:84:00.0 Off |
> > N/A |
> > | 26% 38C P8 10W / 180W | 15MiB / 4095MiB | 0%
> > Default |
> > +-------------------------------+----------------------+----
> > ------------------+
> >
> >
> > +-----------------------------------------------------------
> > ------------------+
> > | Processes: GPU
> > Memory |
> > | GPU PID Type Process name Usage
> > |
> > |===========================================================
> > ==================|
> > | No running processes found
> > |
> > +-----------------------------------------------------------
> > ------------------+
> >
> > Furthermore, I have checked all the relevant cuda and library paths and
> can
> > verify that they indeed point to the correct cuda installation (we have
> > several version on our cluster)
> >
> > > printenv | grep "[Cc][Uu][Dd][Aa]"
> > CUDA_PATH=/cm/shared/apps/cuda91/toolkit/9.1.85
> > MANPATH=/cm/shared/apps/mvapich2/gcc/64/2.2b/share/
> > man:/cm/local/apps/cuda/libs/current/share/man:/cm/shared/
> > apps/slurm/15.08.13/man:/usr/local/share/man:/usr/share/
> > man/overrides:/usr/share/man/en:/usr/share/man:/cm/local/
> > apps/environment-modules/current/share/man
> > CUDA_INC_PATH=/cm/shared/apps/cuda91/toolkit/9.1.85
> > CUDA_SDK=/cm/shared/apps/cuda91/sdk/9.1.85
> > LIBRARY_PATH=/cm/local/apps/cuda/libs/current/lib64:/cm/
> > shared/apps/cuda91/toolkit/9.1.85/targets/x86_64-linux/lib:
> > /cm/shared/apps/slurm/15.08.13/lib64/slurm:/cm/shared/
> > apps/slurm/15.08.13/lib64
> > CUDA_HOME=/cm/shared/apps/cuda91/toolkit/9.1.85
> > LD_LIBRARY_PATH=/cm/shared/apps/cuda91/toolkit/9.1.85/
> > libnvvp:/cm/shared/apps/cuda91/toolkit/9.1.85/libnsight:/cm/shared/apps/
> > cuda55/toolkit/5.5.22//lib:/cm/shared/apps/cuda55/toolkit/
> > 5.5.22//lib64:/cm/shared/apps/gcc/4.8.1/lib64:/cm/shared/
> > apps/gcc/4.8.1/lib:/cm/shared/apps/fftw/openmpi/open64/64/2.
> > 1.5/float/lib/:/cm/shared/apps/hdf5/1.6.10/lib:/cm/
> > shared/apps/mvapich2/gcc/64/2.2b/lib:/cm/shared/apps/cuda91/
> > toolkit/9.1.85/extras/CUPTI/lib64:/cm/local/apps/cuda/
> > libs/current/lib64:/cm/shared/apps/cuda91/toolkit/9.1.85/
> > targets/x86_64-linux/lib:/cm/shared/apps/slurm/15.08.13/
> > lib64/slurm:/cm/shared/apps/slurm/15.08.13/lib64:/cm/
> > local/apps/gcc/5.2.0/lib:/cm/local/apps/gcc/5.2.0/lib64
> > CPATH=/cm/shared/apps/cuda91/sdk/9.1.85/common/inc:/cm/
> > shared/apps/cuda91/toolkit/9.1.85/targets/x86_64-linux/
> > include:/cm/shared/apps/slurm/15.08.13/include
> > CUDA_CACHE_DISABLE=1
> > CUDA_INSTALL_PATH=/cm/shared/apps/cuda91/toolkit/9.1.85
> > PATH=/cm/shared/apps/cuda91/toolkit/9.1.85/libnvvp:/cm/
> > shared/apps/cuda91/toolkit/9.1.85/libnsight:/cm/shared/
> > apps/mvapich2/gcc/64/1.9//bin:/cm/shared/apps/amber12/bin:/
> > cm/shared/apps/hdf5/1.6.10/bin:/cm/shared/apps/mvapich2/
> > gcc/64/2.2b/bin:/cm/local/apps/cuda/libs/current/bin:/
> > cm/shared/apps/cuda91/sdk/9.1.85/bin/x86_64/linux/release:/
> > cm/shared/apps/cuda91/toolkit/9.1.85/bin:/cm/shared/apps/
> > slurm/15.08.13/sbin:/cm/shared/apps/slurm/15.08.13/
> > bin:/cm/local/apps/gcc/5.2.0/bin:/usr/lib64/qt-3.3/bin:/
> > usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/
> > sbin:/sbin:/usr/sbin:/cm/local/apps/environment-
> modules/3.2.10/bin:/home/
> > bradley/bin
> > LD_RUN_PATH=/cm/shared/apps/cuda91/toolkit/9.1.85/libnvvp:
> > /cm/shared/apps/cuda91/toolkit/9.1.85/libnsight:/cm/
> > shared/apps/cuda91/toolkit/9.1.85/targets/x86_64-linux/lib:
> > /cm/shared/apps/fftw/openmpi/open64/64/2.1.5/float/lib/:/
> > cm/shared/apps/mvapich2/gcc/64/2.2b/lib:/cm/local/apps/
> > cuda/libs/current/lib64
> > _LMFILES_=/cm/local/modulefiles/gcc/5.2.0:/cm/
> shared/modulefiles/slurm/15.
> > 08.13:/cm/shared/modulefiles/cuda91/toolkit/9.1.85:/cm/
> > shared/modulefiles/mvapich2/gcc/64/2.2b:/cm/shared/
> > modulefiles/hdf5/1.6.10:/cm/shared/modulefiles/fftw2/
> > openmpi/open64/64/float/2.1.5:/cm/shared/modulefiles/cuda91/
> > blas/9.1.85:/cm/shared/modulefiles/cuda91/fft/9.1.85:
> > /cm/shared/modulefiles/cuda91/nsight/9.1.85:/cm/shared/
> > modulefiles/cuda91/profiler/9.1.85
> > LOADEDMODULES=gcc/5.2.0:slurm/15.08.13:cuda91/toolkit/9.1.
> > 85:mvapich2/gcc/64/2.2b:hdf5/1.6.10:fftw2/openmpi/open64/
> > 64/float/2.1.5:cuda91/blas/9.1.85:cuda91/fft/9.1.85:cuda91/
> > nsight/9.1.85:cuda91/profiler/9.1.85
> > INCLUDEPATH=/cm/shared/apps/cuda91/toolkit/9.1.85/extras/
> > Debugger/include:/cm/shared/apps/cuda91/toolkit/9.1.85/
> > extras/CUPTI/include:/cm/shared/apps/cuda91/toolkit/9.
> > 1.85/targets/x86_64-linux/include/CL:/cm/shared/apps/
> > cuda91/sdk/9.1.85/common/inc:/cm/shared/apps/cuda91/toolkit/
> > 9.1.85/targets/x86_64-linux/include
> > PYTHONPATH=/cm/local/apps/cuda/libs/current/pynvml
> > BLASDIR=/cm/shared/apps/cuda91/toolkit/9.1.85/targets/x86_64-linux/lib
> > CUDA_CMLOCAL_ROOT=/cm/shared/apps/cuda91/toolkit/9.1.85
> > CUDA_ROOT=/cm/shared/apps/cuda91/toolkit/9.1.85
> >
> > I have checked other threads and can verify that the libcuda.so libraries
> > are correct (they seem to be soft links that point to libcuda.so.1 as I
> > have seen in several cuda installation threads about this same runtime
> > issue)
> >
> > I am at a loss for where to go from here...
> >
> > Let me know if any other information is needed to help resolve this
> issue.
> >
> > -Wesley Botello-Smith
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Stephan Schott Verdugo
> Biochemist
>
> Heinrich-Heine-Universitaet Duesseldorf
> Institut fuer Pharm. und Med. Chemie
> Universitaetsstr. 1
> 40225 Duesseldorf
> Germany
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Fri Jun 08 2018 - 12:00:03 PDT
