[AMBER] Clarification on forming covalent linkages

From: senal dinuka <senal.ichemc.edu.lk>
Date: Fri, 1 Jun 2018 14:30:35 +0530

I use AMBER16 with AMBER17 Tools to model the protein 1gos. Literature says
that the protein contains an FAD molecule connected to the protein via
covalent bond to the 394 cysteine residue.
I have generated parameters for FAD separately via parmchk and have used
tleap to combine the two.
I then used the bond command to connect the Sulfur gamma atom and the
corresponding atom on the protein. How do I find out if this has occurred
D L Senal Dinuka
Grad.Chem., A.I.Chem.C.
Research Assistant
College of Chemical Sciences
Institute of Chemistry Ceylon
Sri Lanka
+94 77 627 4678
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Received on Fri Jun 01 2018 - 02:30:02 PDT
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