Hi,
You may want to try the new 'moveanchor' option for 'autoimage' and
see if that helps you. I've only ever tested it on a micelle system
though. Let me know how it goes.
-Dan
On Mon, May 14, 2018 at 9:59 AM, Ming Tang <m21.tang.qut.edu.au> wrote:
> Dear amber experts,
>
> I am simulating a protein with a gold nanoparticle in an octahedral water box. During the simulation, the gold nanoparticle was fixed, but still was "separated" when I visualize the trajectory in chimera. I tried to use autoimage in cpptraj, but failed to fix the peridic issue. I tried to use fixed and origin command, but failed again. Could you please help to give me some guidance?
>
> Thanks a lot,
> Ming
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Received on Wed May 16 2018 - 07:00:02 PDT
