Dear amber experts,
I am simulating a protein with a gold nanoparticle in an octahedral water box. During the simulation, the gold nanoparticle was fixed, but still was "separated" when I visualize the trajectory in chimera. I tried to use autoimage in cpptraj, but failed to fix the peridic issue. I tried to use fixed and origin command, but failed again. Could you please help to give me some guidance?
Thanks a lot,
Ming
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Received on Mon May 14 2018 - 07:00:02 PDT
