Date: Mon, 9 Apr 2018 21:54:27 +0000
Hi everyone,
I am making oxidized and reduced form of amino acids by making them heteroatom. But after making a parameter file when I am visualizing the structure it looks like oxidized/reduced amino acid is not a part of protein. It is a separate ligand (attached image before.png and after.png)
If I remove the TER before heteroatom it is not giving any problem. But amber automatically add ter after heteroatom.
Please suggest me what should I do.
Thanking you,
-Abhishek
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(image/png attachment: before.png)
(image/png attachment: after.png)
