Re: [AMBER] ERROR TUTORIAL AMBER - creating PDB files from the AMBER coordinate files

From: Yuliana Bosken <ydavi002.ucr.edu>
Date: Fri, 23 Mar 2018 15:41:52 -0700

try using:
$ AMBERHOME / bin / ambpdb -p polyAT_vac.prmtop -c polyAT_vac_init_min.rst>
polyAT_vac_init_min.pdb
(replace "<" with "-c"
your rst file file is in binary format and < xxx.rst is for rst file in
ASCII

On Fri, Mar 23, 2018 at 10:16 AM, Edjan Silva <edjan.silva.esenfar.ufal.br>
wrote:

> In the tutorial (3.1.3 creating PDB files from the AMBER coordinate
> files), the following command should be used:
>
> $ AMBERHOME / bin / ambpdb -p polyAT_vac.prmtop
> <polyAT_vac_init_min.rst> polyAT_vac_init_min.pdb
>
>
> After using this command the following message appears:
>
> "Error: Could not read restart atoms / time."
>
> I've done all the steps correctly. in an attachment, input files.
>
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>
> 


-- 
Yuliana Bosken
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Received on Fri Mar 23 2018 - 16:00:01 PDT
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