Thank you Yuliana, the command was successful and solved my problem (so
far). I'm following the AMBER B1 Tutorial. However, this tutorial seems
outdated.
2018-03-23 19:41 GMT-03:00 Yuliana Bosken <ydavi002.ucr.edu>:
> try using:
> $ AMBERHOME / bin / ambpdb -p polyAT_vac.prmtop -c polyAT_vac_init_min.rst>
> polyAT_vac_init_min.pdb
> (replace "<" with "-c"
> your rst file file is in binary format and < xxx.rst is for rst file in
> ASCII
>
> On Fri, Mar 23, 2018 at 10:16 AM, Edjan Silva <edjan.silva.esenfar.ufal.br
> >
> wrote:
>
> > In the tutorial (3.1.3 creating PDB files from the AMBER coordinate
> > files), the following command should be used:
> >
> > $ AMBERHOME / bin / ambpdb -p polyAT_vac.prmtop
> > <polyAT_vac_init_min.rst> polyAT_vac_init_min.pdb
> >
> >
> > After using this command the following message appears:
> >
> > "Error: Could not read restart atoms / time."
> >
> > I've done all the steps correctly. in an attachment, input files.
> >
> > _______________________________________________
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> >
> >
>
>
> --
> Yuliana Bosken
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Received on Fri Mar 23 2018 - 23:00:03 PDT
