In the tutorial (3.1.3 creating PDB files from the AMBER coordinate
files), the following command should be used:
$ AMBERHOME / bin / ambpdb -p polyAT_vac.prmtop
<polyAT_vac_init_min.rst> polyAT_vac_init_min.pdb
After using this command the following message appears:
"Error: Could not read restart atoms / time."
I've done all the steps correctly. in an attachment, input files.
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Received on Fri Mar 23 2018 - 10:30:02 PDT