in case of solely CUDA install, i tried adding following (CUDA_HOME/lib64
as per your suggestion) to my source file but still shared library error
exists.
setenv CUDA_HOME /usr/local/cuda-6.5/
setenv LD_LIBRARY_PATH /usr/local/cuda-6.5/lib64
On Tue, 13 Mar 2018 at 20:34 malkeet singh Bahia <msbahia17.gmail.com>
wrote:
> one more thing, Do I need to modify some paths in my source file now?
>
>
> On Tue, 13 Mar 2018 at 20:14 malkeet singh Bahia <msbahia17.gmail.com>
> wrote:
>
>> Thanks!
>> I tried using ./configure_mpich from AMBERHOME/AMBERTOOL/////src and and
>> as per suggestions installed mpich in this directory. then running
>> configure script created a bin folder in AMBERHOME. bin directory contain
>> ~20 files like mpi** . Now what to do?
>> should i go back to amberhome and use./configure -mpi gnu ?
>>
>> Many thanks in advance!
>>
>> On Tue, 13 Mar 2018 at 18:34 Daniel Roe <daniel.r.roe.gmail.com> wrote:
>>
>>> On Tue, Mar 13, 2018 at 12:14 PM, malkeet singh Bahia
>>> <msbahia17.gmail.com> wrote:
>>> > Than I tried with mpi flag and getting same error as earlier (i'm
>>> working
>>> > on it)
>>>
>>> The issue with your MPI build is with your compilers, as Dave
>>> previously indicated. Your MPI compiler is configure for Intel, and
>>> your Intel license appears expired. One workaround is to download and
>>> unpack Mpich or Openmpi in $AMBERHOME/AmberTools/src and then use
>>> 'configure_mpich' or 'configure_openmpi' to build your own MPI (which
>>> will live in $AMBERHOME).
>>>
>>> > when i used -cuda flag the installation is complete but in make test,
>>> it
>>> > showed 'error while loading shared libraries:libcurand.so.6.5: cannot
>>> open
>>> > the shared object file.
>>> >
>>> > I have added few paths in the .cshrc file, please have a look on this
>>> and
>>> > tell me if anything needed to be changed
>>> >
>>> > setenv CUDA_HOME /usr/local/cuda-6.5/
>>> > setenv LD_LIBRARY_PATH
>>> > "/usr/local/cuda-6.5/targets/x86_64-linux/lib/:${LD_LIBRARY_PATH}"
>>> > setenv PATH "${path}:${CUDA_HOME}/bin"
>>>
>>> Try $CUDA_HOME/lib64 instead.
>>>
>>> -Dan
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>> --
>> Thanks & Warm Regards
>>
>>
>> Malkeet S. Bahia, PhD
>> Post Doctoral Fellow at the lab of Prof. Hanoch Senderowitz
>> PBC Indo-Israel Post-doc fellowship
>> Dept. of Chemistry, Building 211, Room no. 211
>> Bar Ilan University, Ramat Gan, 5290002, ISRAEL
>>
>> Mobile: +91-9815988501 <098159%2088501> (India, watts app only)
>> +972-584553434 <+972%2058-455-3434> (Israel number)
>>
> --
> Thanks & Warm Regards
>
>
> Malkeet S. Bahia, PhD
> Post Doctoral Fellow at the lab of Prof. Hanoch Senderowitz
> PBC Indo-Israel Post-doc fellowship
> Dept. of Chemistry, Building 211, Room no. 211
> Bar Ilan University, Ramat Gan, 5290002, ISRAEL
>
> Mobile: +91-9815988501 <098159%2088501> (India, watts app only)
> +972-584553434 <+972%2058-455-3434> (Israel number)
>
--
Thanks & Warm Regards
Malkeet S. Bahia, PhD
Post Doctoral Fellow at the lab of Prof. Hanoch Senderowitz
PBC Indo-Israel Post-doc fellowship
Dept. of Chemistry, Building 211, Room no. 211
Bar Ilan University, Ramat Gan, 5290002, ISRAEL
Mobile: +91-9815988501 (India, watts app only)
+972-584553434 (Israel number)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Mar 13 2018 - 12:00:03 PDT
