On Fri, Dec 01, 2017, Paul Mortenson wrote:
>
> Thanks for your suggestion, unfortunately that has not worked either.
> [Added ". $AMBERHOME/amber.sh" before each sander command. 14 works
> fine, 16 fails with the same error.]
The problem is the "-r /dev/null" flag in your input. The netcdf code
(at least as it is called from imin=5) does not know how to write to a
pseudo device (which I guess is a bug, but not one that seems very high
priority).
In Amber14, the deafult restart format is ascii (which works ok with
/dev/null). In Amber16, the default restart format is netcdf, which
doesn't play well with /dev/null.
So, either set ntxo=1 in your input file, or remove the "-r" flag, and just
delete the restrt file when you are done.
At least, this solution seems to work for me.
....hope this helps...dac
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Received on Fri Dec 01 2017 - 10:00:04 PST
