Do you see the cpu in use from the program?
$ top
Bill
On 11/13/17 3:32 AM, Rana Rehan Khalid wrote:
> No its not stop . One maybe issue i am not sure that I ran the simulation
> on amber 14 which is install on our cluster while in my laptop it is amber
> 17 and I start analysis on my laptop. Thanks
>
> On Mon, Nov 13, 2017 at 4:26 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> Did the program stop? Was there any other output?
>>
>> Bill
>>
>>
>> On 11/13/17 3:24 AM, Rana Rehan Khalid wrote:
>>> Dear Amber users
>>>
>>> I am facing this error. I have just started the analysis on my mdcrd
>> files
>>> and face this issue kindly guide how can i resolve it. I already run the
>> 20
>>> ns simulation and now start its analysis when i open the first file these
>>> warning messages show.
>>>
>>> parm bay.prmtop
>>> Reading 'bay.prmtop' as Amber Topology
>>> Radius Set: modified Bondi radii (mbondi)
>>>> trajin md1.mdcrd.gz
>>> Reading 'md1.mdcrd.gz' as Amber Trajectory
>>> Warning: md1.mdcrd.gz: Number of frames in compressed traj could not be
>>> determined.
>>> Warning: Frames will be read until EOF.
>>>> list
>>> trajin
>>>
>>>
>>> INPUT TRAJECTORIES (1 total):
>>> 0: 'md1.mdcrd.gz' is an AMBER trajectory, Parm bay.prmtop (Orthogonal
>>> box), unknown #frames, start=0 offset=1
>>> Total number of frames is unknown.
>>>
>>> Regards
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>>
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Received on Mon Nov 13 2017 - 04:00:03 PST
