Re: [AMBER] Mutating DNA bases

From: Debostuti Ghoshdastidar <debostutighosh.gmail.com>
Date: Fri, 28 Jul 2017 10:32:16 +0530

Dear Vlad

Thanks a lot for the information.

Debostuti

On Thu, Jul 27, 2017 at 5:48 PM, Vlad Cojocaru <
vlad.cojocaru.mpi-muenster.mpg.de> wrote:

> Chimera (https://www.cgl.ucsf.edu/chimera/) has a nice function named
> "swapna" for exactly this purpose.
>
> Best
> Vlad
>
> On 07/27/2017 02:12 PM, Debostuti Ghoshdastidar wrote:
> > Dear Amber Users
> >
> > I have an existing DNA/protein pdb and need to mutate the DNA at multiple
> > base pairs. Is it possible to do so using the NAB utility? Alternatively,
> > can I add nucleic acid bases to an existing DNA structure?
> >
> > Any suggestions would be helpful.
> >
> > Thank you
> >
>
> --
> Vlad Cojocaru, Ph.D., Project Group Leader
> Department of Cell and Developmental Biology
> Max Planck Institute for Molecular Biomedicine
> Röntgenstrasse 20, 48149 Münster, Germany
> Tel: +49-251-70365-324; Fax: +49-251-70365-399
> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> http://www.mpi-muenster.mpg.de/43241/cojocaru
>
>
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>



-- 
Debostuti Ghosh Dastidar
DST SERB National Post-Doctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science, Bangalore
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Received on Thu Jul 27 2017 - 22:30:02 PDT
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