Re: [AMBER] Mutating DNA bases

From: Vlad Cojocaru <vlad.cojocaru.mpi-muenster.mpg.de>
Date: Thu, 27 Jul 2017 14:18:59 +0200

Chimera (https://www.cgl.ucsf.edu/chimera/) has a nice function named
"swapna" for exactly this purpose.

Best
Vlad

On 07/27/2017 02:12 PM, Debostuti Ghoshdastidar wrote:
> Dear Amber Users
>
> I have an existing DNA/protein pdb and need to mutate the DNA at multiple
> base pairs. Is it possible to do so using the NAB utility? Alternatively,
> can I add nucleic acid bases to an existing DNA structure?
>
> Any suggestions would be helpful.
>
> Thank you
>

-- 
Vlad Cojocaru, Ph.D., Project Group Leader
Department of Cell and Developmental Biology
Max Planck Institute for Molecular Biomedicine
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/43241/cojocaru
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Received on Thu Jul 27 2017 - 05:30:05 PDT