I created pdb files of the special residues that I am using, and I use:
m1=getpdb("filename.pdb");
mergestr(m,"sense","last",m1,"A","first");
Due to this, the residue no. of the added residue is the same as in
filename.pdb, so the whole strand has the same residue no. throughout.
Due to this, the whole strand is treated as a single molecule. That's why,
I was wondering if there's any way to renumber them before I use mergestr
as I did above.
On Thu, Jul 20, 2017 at 11:03 PM, David A Case <david.case.rutgers.edu>
wrote:
> On Thu, Jul 20, 2017, Akshar Sharma wrote:
>
> > I would like to know if there is any function in NAB for renumbering the
> > residues in a strand as I add them to the strand. I'm using getpdb to
> get a
> > residue and merging it with the strand, so the residue no. doesn't
> change,
> > and that's what I'm trying to fix.
>
> I think we need more details of exactly what the problem appears to be.
> Are you using the addresidue() function?
>
> Sections 35.7 and 36.11 go over the process of taking individual residues
> and constructing a polymer (aka "strand") from them. Maybe that will help.
>
> ....dac
>
>
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Received on Thu Jul 20 2017 - 21:30:02 PDT
