Re: [AMBER] Functions in NAB

From: David A Case <david.case.rutgers.edu>
Date: Thu, 20 Jul 2017 13:33:35 -0400

On Thu, Jul 20, 2017, Akshar Sharma wrote:

> I would like to know if there is any function in NAB for renumbering the
> residues in a strand as I add them to the strand. I'm using getpdb to get a
> residue and merging it with the strand, so the residue no. doesn't change,
> and that's what I'm trying to fix.

I think we need more details of exactly what the problem appears to be.
Are you using the addresidue() function?

Sections 35.7 and 36.11 go over the process of taking individual residues
and constructing a polymer (aka "strand") from them. Maybe that will help.

....dac


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Received on Thu Jul 20 2017 - 11:00:03 PDT
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