All of they refereed to the application of the steered MD protocols
done in N*MD, so for me is interesting of the application of the same
things in amber ... because I like amber more :-)
2017-07-20 13:52 GMT+02:00 David A Case <david.case.rutgers.edu>:
> On Thu, Jul 20, 2017, James Starlight wrote:
>>
>> I am using a molecular dynamics simulation for the investigation of
>> the activation of Mechanic-sensing ionic channel. My question: is it
>> possible to introduce a mechanical stress acting on the membrane or
>> selectively on some part of the protein, assuming that its
>> mechanic-sensing domains are known from the X-ray structure? Which
>> Amber tutorial may be useful for that case?
>
> I don't know of any Amber tutorial or capability in this area. Do a
> literature search to see how others have tried to model mechanic-sensing
> channels.
>
> ...dac
>
>
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Received on Thu Jul 20 2017 - 06:00:03 PDT
