Re: [AMBER] Problem with running mdout_analyzer.py

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Wed, 12 Jul 2017 16:02:02 -0700

Hi Kristin,

Try

$ env

and see if there are any clues. Probably a variable with a name
including LIB points there, and from that we may reason backwards from
general principles, absent expert help.

Bill


On 7/12/17 3:55 PM, Krantzman, Kristin D wrote:
> Hi Bill,
> Python is automatically installed when I type "make install" with AmberTools16. I do not know how to find the configuration file that has the error.
> Kristin
>
> -----Original Message-----
> From: Bill Ross [mailto:ross.cgl.ucsf.edu]
> Sent: Wednesday, July 12, 2017 6:45 PM
> To: amber.ambermd.org
> Subject: Re: [AMBER] Problem with running mdout_analyzer.py
>
> Correction - not a broken install, but a broken config that is concatenating names instead of choosing one.
>
> Bill
>
>
> On 7/12/17 3:43 PM, Bill Ross wrote:
>> > /opt/anaconda1anaconda2anaconda3/lib/tcl8.5
>>
>> That path sure looks like a broken install, but I don't know anything
>> about anaconda.
>>
>> Bill
>>
>> On 7/12/17 3:40 PM, Krantzman, Kristin D wrote:
>>> Greetings AMBER users,
>>> I am trying to run mdout_analyzer.py and get the following error:
>>> Traceback (most recent call last):
>>> File "./mdout_analyzer.py", line 48, in <module>
>>> root = Tk()
>>> File "/usr/local/amber16/miniconda/lib/python2.7/lib-tk/Tkinter.py", line 1820, in __init__
>>> self.tk = _tkinter.create(screenName, baseName, className,
>>> interactive, wantobjects, useTk, sync, use)
>>> _tkinter.TclError: Can't find a usable init.tcl in the following directories:
>>> /opt/anaconda1anaconda2anaconda3/lib/tcl8.5
>>> /usr/local/amber16/lib/tcl8.5 /usr/local/lib/tcl8.5 /usr/local/amber16/library /usr/local/library /usr/local/tcl8.5.18/library /usr/tcl8.5.18/library I reinstalled tcl, I still get this error. Could you help with this?
>>> Best, Kristin
>>>
>>>
>>> This probably means that Tcl wasn't installed properly.
>>> Kristin D. Krantzman
>>> Professor, Department of Chemistry and Biochemistry College of
>>> Charleston Charleston, SC 29424
>>> (843) 953-3378
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org
>>> _mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXC
>>> Kpr5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=05GA69kYpADyAfYrZgotQ_jPUCJfvrw7
>>> ZdtuDC7nbNI&s=v8nAsRTANLujksAhkfYwDGyLppXkweYL1R6TmLUC-7w&e=
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org_
>> mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXCKp
>> r5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=05GA69kYpADyAfYrZgotQ_jPUCJfvrw7Zdt
>> uDC7nbNI&s=v8nAsRTANLujksAhkfYwDGyLppXkweYL1R6TmLUC-7w&e=
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org_mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXCKpr5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=05GA69kYpADyAfYrZgotQ_jPUCJfvrw7ZdtuDC7nbNI&s=v8nAsRTANLujksAhkfYwDGyLppXkweYL1R6TmLUC-7w&e=
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 12 2017 - 16:30:03 PDT
Custom Search